IL_5H4P_074

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

5H4P|1|1|A|2242, 5H4P|1|1|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H4P_074 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.1119

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5H4P|1|1|U|2200
5H4P|1|1|G|2201
*
5H4P|1|1|U|2241
5H4P|1|1|A|2242
5H4P|1|1|A|2243
5H4P|1|1|A|2244

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain w

60S ribosomal export protein NMD3