IL_5H5U_036

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

5H5U|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_036 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0593

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5H5U|1|A|U|1018
5H5U|1|A|U|1019
5H5U|1|A|A|1020
5H5U|1|A|A|1021
5H5U|1|A|G|1022
5H5U|1|A|U|1023
5H5U|1|A|G|1024
*
5H5U|1|A|C|1140
5H5U|1|A|U|1141
5H5U|1|A|A|1142
5H5U|1|A|A|1143
5H5U|1|A|A|1144

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36