IL_5H5U_101

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

5H5U|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_101 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0621

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5H5U|1|A|C|2636
5H5U|1|A|U|2637
5H5U|1|A|G|2638
5H5U|1|A|A|2639
5H5U|1|A|G|2640
*
5H5U|1|A|C|2774
5H5U|1|A|G|2775
5H5U|1|A|A|2776
5H5U|1|A|G|2777
5H5U|1|A|A|2778
5H5U|1|A|U|2779
5H5U|1|A|G|2780
5H5U|1|A|A|2781
5H5U|1|A|G|2782

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L13