IL_5H5U_151

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

5H5U|1|h|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_151 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0768

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

5H5U|1|h|U|684
5H5U|1|h|G|685
5H5U|1|h|U|686
5H5U|1|h|A|687
5H5U|1|h|G|688
*
5H5U|1|h|C|699
5H5U|1|h|G|700
5H5U|1|h|U|701
5H5U|1|h|A|702
5H5U|1|h|G|703
5H5U|1|h|A|704
5H5U|1|h|G|705
5H5U|1|h|A|706

Current chains

Chain h

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain r

30S ribosomal protein S11