IL_5HAU_166

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

5HAU|1|1a|U|1239, 5HAU|1|1a|U|1260, 5HAU|1|1a|A|1262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_166 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.5845

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

5HAU|1|1a|G|1237
5HAU|1|1a|A|1238
5HAU|1|1a|U|1239
5HAU|1|1a|G|1240
*
5HAU|1|1a|C|1259
5HAU|1|1a|U|1260
5HAU|1|1a|A|1261
5HAU|1|1a|A|1262
5HAU|1|1a|U|1263
5HAU|1|1a|C|1264

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1c

30S ribosomal protein S3

Chain 1j

30S ribosomal protein S10

Chain 1n

30S ribosomal protein S14 type Z