IL_5HCP_262

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

UUGGU*GCUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCP_262 not in the Motif Atlas

Homologous match to IL_4WF9_084

Geometric discrepancy: 0.5508

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5HCP|1|2A|U|2119
5HCP|1|2A|U|2120
5HCP|1|2A|G|2121
5HCP|1|2A|G|2122
5HCP|1|2A|U|2123
*
5HCP|1|2A|G|2208
5HCP|1|2A|C|2209
5HCP|1|2A|U|2210
5HCP|1|2A|G|2211
5HCP|1|2A|G|2212

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2I

50S ribosomal protein L9