IL_5HCP_326

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCP_326 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0757

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5HCP|1|2a|G|865
5HCP|1|2a|G|866
5HCP|1|2a|A|867
5HCP|1|2a|G|868
5HCP|1|2a|U|869
5HCP|1|2a|A|870
5HCP|1|2a|C|871
5HCP|1|2a|G|872
*
5HCP|1|2a|U|883
5HCP|1|2a|G|884
5HCP|1|2a|A|885
5HCP|1|2a|A|886
5HCP|1|2a|A|887
5HCP|1|2a|C|888

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17