IL_5HCQ_075
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 5HCQ|1|1A|A|1959, 5HCQ|1|1A|U|1965, 5HCQ|1|1A|U|1984
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HCQ_075 not in the Motif Atlas
- Homologous match to IL_4WF9_077
- Geometric discrepancy: 0.1168
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
5HCQ|1|1A|C|1955
5HCQ|1|1A|G|1956
5HCQ|1|1A|A|1957
5HCQ|1|1A|A|1958
5HCQ|1|1A|A|1959
5HCQ|1|1A|U|1960
5HCQ|1|1A|U|1961
5HCQ|1|1A|C|1962
5HCQ|1|1A|C|1963
5HCQ|1|1A|U|1964
5HCQ|1|1A|U|1965
5HCQ|1|1A|G|1966
*
5HCQ|1|1A|C|1982
5HCQ|1|1A|C|1983
5HCQ|1|1A|U|1984
5HCQ|1|1A|G|1985
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: