IL_5HCR_072

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCR_072 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.0722

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5HCR|1|1A|U|1881
5HCR|1|1A|C|1882
5HCR|1|1A|A|1883
5HCR|1|1A|A|1884
5HCR|1|1A|G|1885
*
5HCR|1|1A|C|1908
5HCR|1|1A|G|1909
5HCR|1|1A|A|1910
5HCR|1|1A|A|1911
5HCR|1|1A|G|1912

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains