IL_5HCR_143
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 5HCR|1|1a|A|686
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HCR_143 not in the Motif Atlas
- Homologous match to IL_4LFB_031
- Geometric discrepancy: 0.0905
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5HCR|1|1a|G|667
5HCR|1|1a|A|668
5HCR|1|1a|G|669
5HCR|1|1a|U|670
5HCR|1|1a|A|671
5HCR|1|1a|G|672
*
5HCR|1|1a|C|683
5HCR|1|1a|G|684
5HCR|1|1a|C|685
5HCR|1|1a|A|686
5HCR|1|1a|G|687
5HCR|1|1a|A|688
5HCR|1|1a|U|689
5HCR|1|1a|A|690
5HCR|1|1a|C|691
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1k
- 30S ribosomal protein S11
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