IL_5HCR_193

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5HCR|1|2A|G|847, 5HCR|1|2A|G|851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCR_193 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0655

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5HCR|1|2A|G|720
5HCR|1|2A|A|721
5HCR|1|2A|A|722
5HCR|1|2A|A|723
5HCR|1|2A|C|724
*
5HCR|1|2A|G|845
5HCR|1|2A|A|846
5HCR|1|2A|G|847
5HCR|1|2A|A|848
5HCR|1|2A|U|849
5HCR|1|2A|A|850
5HCR|1|2A|G|851
5HCR|1|2A|C|852

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15