IL_5HCR_217

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

5HCR|1|2A|A|1091

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCR_217 not in the Motif Atlas

Geometric match to IL_4V9F_042

Geometric discrepancy: 0.275

The information below is about IL_4V9F_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.3

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

5HCR|1|2A|C|1088
5HCR|1|2A|G|1089
5HCR|1|2A|A|1090
5HCR|1|2A|A|1091
5HCR|1|2A|G|1092
5HCR|1|2A|A|1093
5HCR|1|2A|C|1094
5HCR|1|2A|A|1095
5HCR|1|2A|G|1096
*
5HCR|1|2A|U|1153
5HCR|1|2A|C|1154
5HCR|1|2A|G|1155
5HCR|1|2A|A|1156
5HCR|1|2A|G|1157

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6