IL_5HCR_218

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUUGG*CAUC

Length

9 nucleotides

Bulged bases

5HCR|1|2A|U|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCR_218 not in the Motif Atlas

Homologous match to IL_9DFE_042

Geometric discrepancy: 0.5782

The information below is about IL_9DFE_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCR|1|2A|G|1104
5HCR|1|2A|U|1105
5HCR|1|2A|U|1106
5HCR|1|2A|G|1107
5HCR|1|2A|G|1108
*
5HCR|1|2A|C|1121
5HCR|1|2A|A|1122
5HCR|1|2A|U|1123
5HCR|1|2A|C|1124

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25