IL_5HCR_275

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

5HCR|1|2A|G|2792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCR_275 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0454

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5HCR|1|2A|U|2647
5HCR|1|2A|U|2648
5HCR|1|2A|G|2649
5HCR|1|2A|A|2650
5HCR|1|2A|G|2651
*
5HCR|1|2A|C|2786
5HCR|1|2A|A|2787
5HCR|1|2A|A|2788
5HCR|1|2A|G|2789
5HCR|1|2A|A|2790
5HCR|1|2A|U|2791
5HCR|1|2A|G|2792
5HCR|1|2A|A|2793
5HCR|1|2A|G|2794

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13