IL_5HCR_280

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

5HCR|1|2A|A|2777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCR_280 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.15

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5HCR|1|2A|G|2749
5HCR|1|2A|A|2750
5HCR|1|2A|U|2751
5HCR|1|2A|A|2752
5HCR|1|2A|A|2753
5HCR|1|2A|C|2754
*
5HCR|1|2A|G|2774
5HCR|1|2A|G|2775
5HCR|1|2A|A|2776
5HCR|1|2A|A|2777
5HCR|1|2A|G|2778
5HCR|1|2A|C|2779

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13