IL_5HCR_311

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

5HCR|1|2a|A|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCR_311 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0857

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

5HCR|1|2a|C|553
5HCR|1|2a|G|554
5HCR|1|2a|U|555
5HCR|1|2a|A|556
5HCR|1|2a|A|557
5HCR|1|2a|A|558
5HCR|1|2a|G|559
*
5HCR|1|2a|C|858
5HCR|1|2a|G|859

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2e

30S ribosomal protein S5

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17