IL_5HCR_340

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCR_340 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.105

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5HCR|1|2a|C|1285
5HCR|1|2a|G|1286
5HCR|1|2a|G|1287
5HCR|1|2a|A|1288
5HCR|1|2a|U|1289
5HCR|1|2a|U|1290
*
5HCR|1|2a|A|1311
5HCR|1|2a|U|1312
5HCR|1|2a|G|1313
5HCR|1|2a|A|1314
5HCR|1|2a|A|1315
5HCR|1|2a|G|1316

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx