IL_5HCR_357

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

5HCR|1|2A|G|976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCR_357 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.0979

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5HCR|1|2A|C|890
5HCR|1|2A|G|891
5HCR|1|2A|C|892
5HCR|1|2A|U|893
5HCR|1|2A|G|894
5HCR|1|2A|A|895
5HCR|1|2A|C|896
*
5HCR|1|2A|G|972
5HCR|1|2A|G|973
5HCR|1|2A|U|974
5HCR|1|2A|G|975
5HCR|1|2A|G|976
5HCR|1|2A|A|977
5HCR|1|2A|G|978

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30