IL_5HD1_379

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UG*CACAA

Length

7 nucleotides

Bulged bases

5HD1|1|2A|C|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HD1_379 not in the Motif Atlas

Homologous match to IL_9DFE_053

Geometric discrepancy: 0.1757

The information below is about IL_9DFE_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00881.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5HD1|1|2A|U|1460
5HD1|1|2A|G|1461
*
5HD1|1|2A|C|1628
5HD1|1|2A|A|1629
5HD1|1|2A|C|1630
5HD1|1|2A|A|1631
5HD1|1|2A|A|1632

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains