IL_5HKV_011

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GCAC*GAGUGAAAUAGAAC

Length

18 nucleotides

Bulged bases

5HKV|1|X|U|549, 5HKV|1|X|A|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_011 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.0584

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

5HKV|1|X|G|527
5HKV|1|X|C|528
5HKV|1|X|A|529
5HKV|1|X|C|530
*
5HKV|1|X|G|541
5HKV|1|X|A|542
5HKV|1|X|G|543
5HKV|1|X|U|544
5HKV|1|X|G|545
5HKV|1|X|A|546
5HKV|1|X|A|547
5HKV|1|X|A|548
5HKV|1|X|U|549
5HKV|1|X|A|550
5HKV|1|X|G|551
5HKV|1|X|A|552
5HKV|1|X|A|553
5HKV|1|X|C|554

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24