IL_5HL7_067

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UUAGC*GCGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HL7_067 not in the Motif Atlas

Geometric match to IL_8GLP_051

Geometric discrepancy: 0.3421

The information below is about IL_8GLP_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.2

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

5HL7|1|X|U|1891
5HL7|1|X|U|1892
5HL7|1|X|A|1893
5HL7|1|X|G|1894
5HL7|1|X|C|1895
*
5HL7|1|X|G|1900
5HL7|1|X|C|1901
5HL7|1|X|G|1902
5HL7|1|X|A|1903
5HL7|1|X|A|1904
5HL7|1|X|G|1905

Current chains

Chain X

23S ribosomal RNA

Nearby chains