IL_5HL7_076

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

AAUUC*GGCUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HL7_076 not in the Motif Atlas

Homologous match to IL_4WF9_084

Geometric discrepancy: 0.2928

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5HL7|1|X|A|2122
5HL7|1|X|A|2123
5HL7|1|X|U|2124
5HL7|1|X|U|2125
5HL7|1|X|C|2126
*
5HL7|1|X|G|2217
5HL7|1|X|G|2218
5HL7|1|X|C|2219
5HL7|1|X|U|2220
5HL7|1|X|U|2221

Current chains

Chain X

23S ribosomal RNA

Nearby chains