3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UCUAGACAG*CCGAA
Length
14 nucleotides
Bulged bases
5I4L|1|1|A|1221
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_054 not in the Motif Atlas
Homologous match to IL_5TBW_054
Geometric discrepancy: 0.0974
The information below is about IL_5TBW_054
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_90538.5
Basepair signature
cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
Number of instances in this motif group
6

Unit IDs

5I4L|1|1|U|1218
5I4L|1|1|C|1219
5I4L|1|1|U|1220
5I4L|1|1|A|1221
5I4L|1|1|G|1222
5I4L|1|1|A|1223
5I4L|1|1|C|1224
5I4L|1|1|A|1225
5I4L|1|1|G|1226
*
5I4L|1|1|C|1283
5I4L|1|1|C|1284
5I4L|1|1|G|1285
5I4L|1|1|A|1286
5I4L|1|1|A|1287

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L9
60S ribosomal protein L9-A
Chain N0
60S ribosomal protein L20-A
Chain Q0
Ubiquitin-60S ribosomal protein L40

Coloring options:


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