IL_5I4L_055

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

5I4L|1|1|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5I4L_055 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.566

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.2

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

5I4L|1|1|G|1234
5I4L|1|1|U|1235
5I4L|1|1|G|1236
5I4L|1|1|G|1237
5I4L|1|1|C|1238
*
5I4L|1|1|G|1250
5I4L|1|1|A|1251
5I4L|1|1|A|1252
5I4L|1|1|U|1253
5I4L|1|1|C|1254

Current chains

Chain 1

25S ribosomal RNA

Nearby chains