3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGGAAUU*GGAGAUG
Length
14 nucleotides
Bulged bases
5I4L|1|1|U|1716, 5I4L|1|1|A|1729
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_073 not in the Motif Atlas
Homologous match to IL_5TBW_073
Geometric discrepancy: 0.0569
The information below is about IL_5TBW_073
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_60192.2
Basepair signature
cWW-tSH-tSH-tSS-tHS-L-R-cWW
Number of instances in this motif group
3

Unit IDs

5I4L|1|1|C|1711
5I4L|1|1|G|1712
5I4L|1|1|G|1713
5I4L|1|1|A|1714
5I4L|1|1|A|1715
5I4L|1|1|U|1716
5I4L|1|1|U|1717
*
5I4L|1|1|G|1727
5I4L|1|1|G|1728
5I4L|1|1|A|1729
5I4L|1|1|G|1730
5I4L|1|1|A|1731
5I4L|1|1|U|1732
5I4L|1|1|G|1733

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain C3
40S ribosomal protein S13
Chain M9
60S ribosomal protein L19-A
Chain N7
60S ribosomal protein L27-A
Chain O0
60S ribosomal protein L30
Chain Q3
60S ribosomal protein L43-A

Coloring options:


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