3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UG*UAAA
Length
6 nucleotides
Bulged bases
5I4L|1|1|A|2242, 5I4L|1|1|A|2243
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_085 not in the Motif Atlas
Homologous match to IL_5TBW_085
Geometric discrepancy: 0.0445
The information below is about IL_5TBW_085
Detailed Annotation
Major groove intercalation
Broad Annotation
Major groove intercalation
Motif group
IL_82107.1
Basepair signature
cWW-cWW
Number of instances in this motif group
34

Unit IDs

5I4L|1|1|U|2200
5I4L|1|1|G|2201
*
5I4L|1|1|U|2241
5I4L|1|1|A|2242
5I4L|1|1|A|2243
5I4L|1|1|A|2244

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L2
60S ribosomal protein L2-A

Coloring options:


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