3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UAAUU*ACCA
Length
9 nucleotides
Bulged bases
5I4L|1|1|C|3092
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_116 not in the Motif Atlas
Homologous match to IL_5TBW_117
Geometric discrepancy: 0.0679
The information below is about IL_5TBW_117
Detailed Annotation
Major groove minor groove platform with tHH
Broad Annotation
No text annotation
Motif group
IL_14592.1
Basepair signature
cWW-tHH-cWW-L-L
Number of instances in this motif group
4

Unit IDs

5I4L|1|1|U|3047
5I4L|1|1|A|3048
5I4L|1|1|A|3049
5I4L|1|1|U|3050
5I4L|1|1|U|3051
*
5I4L|1|1|A|3091
5I4L|1|1|C|3092
5I4L|1|1|C|3093
5I4L|1|1|A|3094

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L3
60S ribosomal protein L3
Chain N3
60S ribosomal protein L23-A
Chain N4
60S ribosomal protein L24-A

Coloring options:


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