3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
AUUAU*AGAAU
Length
10 nucleotides
Bulged bases
5I4L|1|1|A|3130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_119 not in the Motif Atlas
Homologous match to IL_5TBW_120
Geometric discrepancy: 0.0595
The information below is about IL_5TBW_120
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

5I4L|1|1|A|3103
5I4L|1|1|U|3104
5I4L|1|1|U|3105
5I4L|1|1|A|3106
5I4L|1|1|U|3107
*
5I4L|1|1|A|3127
5I4L|1|1|G|3128
5I4L|1|1|A|3129
5I4L|1|1|A|3130
5I4L|1|1|U|3131

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L9
60S ribosomal protein L9-A
Chain M6
60S ribosomal protein L16-A
Chain Q0
Ubiquitin-60S ribosomal protein L40

Coloring options:


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