3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUGCCAG*CGGUAAUUC
Length
16 nucleotides
Bulged bases
5I4L|1|2|A|579
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_163 not in the Motif Atlas
Homologous match to IL_8C3A_425
Geometric discrepancy: 0.2338
The information below is about IL_8C3A_425
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.2
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

5I4L|1|2|G|562
5I4L|1|2|U|563
5I4L|1|2|G|564
5I4L|1|2|C|565
5I4L|1|2|C|566
5I4L|1|2|A|567
5I4L|1|2|G|568
*
5I4L|1|2|C|575
5I4L|1|2|G|576
5I4L|1|2|G|577
5I4L|1|2|U|578
5I4L|1|2|A|579
5I4L|1|2|A|580
5I4L|1|2|U|581
5I4L|1|2|U|582
5I4L|1|2|C|583

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain D3
40S ribosomal protein S23-A
Chain E0
40S ribosomal protein S30-A
Chain S3
40S ribosomal protein S3
Chain SM
Suppressor protein STM1,Suppressor protein STM1,Suppressor protein STM1

Coloring options:


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