3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGA*UUUUC
Length
8 nucleotides
Bulged bases
5I4L|1|5|U|1820, 5I4L|1|5|U|1821
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_295 not in the Motif Atlas
Homologous match to IL_8C3A_071
Geometric discrepancy: 0.2409
The information below is about IL_8C3A_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_43275.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
30

Unit IDs

5I4L|1|5|G|1623
5I4L|1|5|G|1624
5I4L|1|5|A|1625
*
5I4L|1|5|U|1818
5I4L|1|5|U|1819
5I4L|1|5|U|1820
5I4L|1|5|U|1821
5I4L|1|5|C|1822

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain o4
60S ribosomal protein L34-A

Coloring options:


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