IL_5I4L_295
3D structure
- PDB id
- 5I4L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGA*UUUUC
- Length
- 8 nucleotides
- Bulged bases
- 5I4L|1|5|U|1820, 5I4L|1|5|U|1821
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5I4L_295 not in the Motif Atlas
- Homologous match to IL_8C3A_071
- Geometric discrepancy: 0.2409
- The information below is about IL_8C3A_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_43275.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
5I4L|1|5|G|1623
5I4L|1|5|G|1624
5I4L|1|5|A|1625
*
5I4L|1|5|U|1818
5I4L|1|5|U|1819
5I4L|1|5|U|1820
5I4L|1|5|U|1821
5I4L|1|5|C|1822
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain o4
- 60S ribosomal protein L34-A
Coloring options: