3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CCAAUC*GGAG
Length
10 nucleotides
Bulged bases
5I4L|1|6|G|459
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_389 not in the Motif Atlas
Homologous match to IL_4V88_408
Geometric discrepancy: 0.0578
The information below is about IL_4V88_408
Detailed Annotation
C-loop with extra cWW pair
Broad Annotation
C-loop
Motif group
IL_11347.2
Basepair signature
cWW-cWW-L-cWW-L
Number of instances in this motif group
3

Unit IDs

5I4L|1|6|C|443
5I4L|1|6|C|444
5I4L|1|6|A|445
5I4L|1|6|A|446
5I4L|1|6|U|447
5I4L|1|6|C|448
*
5I4L|1|6|G|458
5I4L|1|6|G|459
5I4L|1|6|A|460
5I4L|1|6|G|461

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain d4
40S ribosomal protein S24-A
Chain s4
40S ribosomal protein S4-A
Chain s9
40S ribosomal protein S9-A

Coloring options:


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