3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUAU*AGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_412 not in the Motif Atlas
Homologous match to IL_4V88_432
Geometric discrepancy: 0.047
The information below is about IL_4V88_432
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

5I4L|1|6|G|885
5I4L|1|6|U|886
5I4L|1|6|A|887
5I4L|1|6|U|888
*
5I4L|1|6|A|924
5I4L|1|6|G|925
5I4L|1|6|A|926
5I4L|1|6|C|927

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain c4
40S ribosomal protein S14-B
Chain d6
40S ribosomal protein S26-B
Chain l2
60S ribosomal protein L2-A
Chain q3
60S ribosomal protein L43-A
Chain s1
40S ribosomal protein S1-A

Coloring options:


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