IL_5I4L_472
3D structure
- PDB id
- 5I4L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCU*GCGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5I4L_472 not in the Motif Atlas
- Geometric match to IL_1D4R_003
- Geometric discrepancy: 0.2666
- The information below is about IL_1D4R_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
5I4L|1|2|G|1172
5I4L|1|2|C|1173
5I4L|1|2|C|1174
5I4L|1|2|U|1175
*
5I4L|1|2|G|1464
5I4L|1|2|C|1465
5I4L|1|2|G|1466
5I4L|1|2|C|1467
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C6
- 40S ribosomal protein S16-A
- Chain C8
- 40S ribosomal protein S18-A
- Chain C9
- 40S ribosomal protein S19-A
- Chain D0
- 40S ribosomal protein S20
Coloring options: