IL_5I4L_485
3D structure
- PDB id
- 5I4L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 5I4L|1|6|C|1274, 5I4L|1|6|U|1432, 5I4L|1|6|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5I4L_485 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.081
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86012.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
5I4L|1|6|U|1272
5I4L|1|6|G|1273
5I4L|1|6|C|1274
5I4L|1|6|A|1275
5I4L|1|6|U|1276
5I4L|1|6|G|1277
5I4L|1|6|G|1278
*
5I4L|1|6|U|1430
5I4L|1|6|C|1431
5I4L|1|6|U|1432
5I4L|1|6|G|1433
5I4L|1|6|U|1434
5I4L|1|6|G|1435
5I4L|1|6|A|1436
5I4L|1|6|U|1437
5I4L|1|6|G|1438
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c0
- 40S ribosomal protein S10-A
- Chain d0
- 40S ribosomal protein S20
- Chain d9
- 40S ribosomal protein S29-A
- Chain e1
- Ubiquitin-40S ribosomal protein S31
- Chain s3
- 40S ribosomal protein S3
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