IL_5IB7_140

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

GCCUG*CUGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB7_140 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.3968

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

5IB7|1|14|G|2106
5IB7|1|14|C|2107
5IB7|1|14|C|2108
5IB7|1|14|U|2109
5IB7|1|14|G|2110
*
5IB7|1|14|C|2179
5IB7|1|14|U|2180
5IB7|1|14|G|2181
5IB7|1|14|G|2182
5IB7|1|14|C|2183

Current chains

Chain 14

23S ribosomal RNA

Nearby chains