3D structure

PDB id
5IB7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
2.99 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
5IB7|1|1G|A|532, 5IB7|1|1G|U|534, 5IB7|1|1G|A|535
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5IB7_193 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.1398
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

5IB7|1|1G|G|515
5IB7|1|1G|U|516
5IB7|1|1G|G|517
5IB7|1|1G|C|518
5IB7|1|1G|C|519
5IB7|1|1G|A|520
5IB7|1|1G|G|521
*
5IB7|1|1G|C|528
5IB7|1|1G|G|529
5IB7|1|1G|G|530
5IB7|1|1G|U|531
5IB7|1|1G|A|532
5IB7|1|1G|A|533
5IB7|1|1G|U|534
5IB7|1|1G|A|535
5IB7|1|1G|C|536

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain 1L
Transfer RNA; tRNA
Chain 22
30S ribosomal protein S3
Chain 32
30S ribosomal protein S4
Chain 3A
30S ribosomal protein S12
Chain 4L
mRNA

Coloring options:


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