IL_5IB8_374

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

UG*CACAA

Length

7 nucleotides

Bulged bases

5IB8|1|14|C|1585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_374 not in the Motif Atlas

Homologous match to IL_9DFE_053

Geometric discrepancy: 0.3336

The information below is about IL_9DFE_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00881.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5IB8|1|14|U|1415
5IB8|1|14|G|1416
*
5IB8|1|14|C|1582
5IB8|1|14|A|1583
5IB8|1|14|C|1585
5IB8|1|14|A|1586
5IB8|1|14|A|1587

Current chains

Chain 14

23S ribosomal RNA

Nearby chains