IL_5IBB_035
3D structure
- PDB id
- 5IBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IBB_035 not in the Motif Atlas
- Homologous match to IL_4LFB_034
- Geometric discrepancy: 0.068
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
5IBB|1|13|G|887
5IBB|1|13|G|888
5IBB|1|13|A|889
5IBB|1|13|G|890
5IBB|1|13|U|891
5IBB|1|13|A|892
5IBB|1|13|C|893
5IBB|1|13|G|894
*
5IBB|1|13|U|905
5IBB|1|13|G|906
5IBB|1|13|A|907
5IBB|1|13|A|908
5IBB|1|13|A|909
5IBB|1|13|C|910
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 3I
- 30S ribosomal protein S12
- Chain 8I
- 30S ribosomal protein S17
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