IL_5IBB_312

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

5IBB|1|1H|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IBB_312 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.5844

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5IBB|1|1H|C|2129
5IBB|1|1H|U|2130
5IBB|1|1H|G|2131
5IBB|1|1H|U|2132
5IBB|1|1H|G|2133
5IBB|1|1H|A|2134
5IBB|1|1H|A|2135
5IBB|1|1H|C|2136
*
5IBB|1|1H|G|2155
5IBB|1|1H|G|2156
5IBB|1|1H|G|2157
5IBB|1|1H|A|2158
5IBB|1|1H|G|2159

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 71

50S ribosomal protein L1