IL_5IMQ_035

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGC*GCC

Length

7 nucleotides

Bulged bases

5IMQ|1|A|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_035 not in the Motif Atlas

Geometric match to IL_5E81_371

Geometric discrepancy: 0.2156

The information below is about IL_5E81_371

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

5IMQ|1|A|G|1048
5IMQ|1|A|U|1049
5IMQ|1|A|G|1050
5IMQ|1|A|C|1051
*
5IMQ|1|A|G|1207
5IMQ|1|A|C|1208
5IMQ|1|A|C|1209

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S3

Chain R

30S ribosomal protein S14 type Z