IL_5IMQ_058

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

5IMQ|1|D|G|101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_058 not in the Motif Atlas

Homologous match to IL_7A0S_004

Geometric discrepancy: 0.3377

The information below is about IL_7A0S_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_94910.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5IMQ|1|D|G|81
5IMQ|1|D|G|82
5IMQ|1|D|G|83
5IMQ|1|D|A|84
5IMQ|1|D|G|85
*
5IMQ|1|D|C|97
5IMQ|1|D|G|98
5IMQ|1|D|U|99
5IMQ|1|D|G|101
5IMQ|1|D|G|102
5IMQ|1|D|A|103
5IMQ|1|D|U|104
5IMQ|1|D|C|105

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L24

Chain t

50S ribosomal protein L29