IL_5IMQ_087

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUUCC*GGAAGUG

Length

13 nucleotides

Bulged bases

5IMQ|1|D|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_087 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.3824

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5IMQ|1|D|C|1196
5IMQ|1|D|G|1197
5IMQ|1|D|U|1198
5IMQ|1|D|U|1199
5IMQ|1|D|C|1200
5IMQ|1|D|C|1201
*
5IMQ|1|D|G|1244
5IMQ|1|D|G|1245
5IMQ|1|D|A|1246
5IMQ|1|D|A|1247
5IMQ|1|D|G|1248
5IMQ|1|D|U|1249
5IMQ|1|D|G|1250

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L4

Chain h

50S ribosomal protein L15

Chain m

50S ribosomal protein L20