IL_5IMQ_148

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCCG*UGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_148 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3173

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5IMQ|1|A|C|186
5IMQ|1|A|C|186|||A
5IMQ|1|A|C|186|||B
5IMQ|1|A|G|186|||C
*
5IMQ|1|A|U|191|||D
5IMQ|1|A|G|191|||E
5IMQ|1|A|U|191|||F
5IMQ|1|A|G|191

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain X

30S ribosomal protein S20