IL_5IMR_001
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- CGG*UCCG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMR_001 not in the Motif Atlas
- Geometric match to IL_8CRE_417
- Geometric discrepancy: 0.3988
- The information below is about IL_8CRE_417
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99358.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
5IMR|1|5|C|4
5IMR|1|5|G|5
5IMR|1|5|G|6
*
5IMR|1|5|U|66
5IMR|1|5|C|67
5IMR|1|5|C|68
5IMR|1|5|G|69
Current chains
- Chain 5
- E site- tRNA
Nearby chains
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain x
- 50S ribosomal protein L33
Coloring options: