3D structure

PDB id
5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
5.7 Å

Loop

Sequence
GGACG*CGGUAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5IMR_018 not in the Motif Atlas
Geometric match to IL_6CZR_130
Geometric discrepancy: 0.2993
The information below is about IL_6CZR_130
Detailed Annotation
6x5 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_88269.3
Basepair signature
cWW-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

5IMR|1|A|G|446
5IMR|1|A|G|447
5IMR|1|A|A|448
5IMR|1|A|C|449
5IMR|1|A|G|450
*
5IMR|1|A|C|483
5IMR|1|A|G|484
5IMR|1|A|G|485
5IMR|1|A|U|486
5IMR|1|A|A|487
5IMR|1|A|C|488

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain H
30S ribosomal protein S4
Chain T
30S ribosomal protein S16

Coloring options:


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