IL_5IMR_020
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- CGGCCAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMR_020 not in the Motif Atlas
- Homologous match to IL_6CZR_132
- Geometric discrepancy: 0.259
- The information below is about IL_6CZR_132
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.3
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
5IMR|1|A|C|504
5IMR|1|A|G|505
5IMR|1|A|G|506
5IMR|1|A|C|507
5IMR|1|A|C|508
5IMR|1|A|A|509
5IMR|1|A|A|510
5IMR|1|A|C|511
*
5IMR|1|A|G|540
5IMR|1|A|G|541
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain H
- 30S ribosomal protein S4
- Chain I
- 30S ribosomal protein S5
- Chain P
- 30S ribosomal protein S12
Coloring options: