IL_5IMR_022

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GCGUAAAG*CGC

Length

11 nucleotides

Bulged bases

5IMR|1|A|G|570, 5IMR|1|A|U|571, 5IMR|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_022 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2449

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5IMR|1|A|G|568
5IMR|1|A|C|569
5IMR|1|A|G|570
5IMR|1|A|U|571
5IMR|1|A|A|572
5IMR|1|A|A|573
5IMR|1|A|A|574
5IMR|1|A|G|575
*
5IMR|1|A|C|880
5IMR|1|A|G|881
5IMR|1|A|C|882

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S5

Chain L

30S ribosomal protein S8

Chain P

30S ribosomal protein S12