3D structure

PDB id
5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
5.7 Å

Loop

Sequence
GA*UGAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5IMR_027 not in the Motif Atlas
Geometric match to IL_4QK9_003
Geometric discrepancy: 0.2887
The information below is about IL_4QK9_003
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

5IMR|1|A|G|654
5IMR|1|A|A|655
*
5IMR|1|A|U|751
5IMR|1|A|G|752
5IMR|1|A|A|753
5IMR|1|A|C|754

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain L
30S ribosomal protein S8
Chain S
30S ribosomal protein S15

Coloring options:


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