IL_5IMR_040

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGUG*CCC

Length

7 nucleotides

Bulged bases

5IMR|1|A|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_040 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.3371

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

5IMR|1|A|G|1047
5IMR|1|A|G|1048
5IMR|1|A|U|1049
5IMR|1|A|G|1050
*
5IMR|1|A|C|1208
5IMR|1|A|C|1209
5IMR|1|A|C|1210

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S10

Chain R

30S ribosomal protein S14 type Z