IL_5IMR_042

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_042 not in the Motif Atlas

Geometric match to IL_6CZR_155

Geometric discrepancy: 0.2657

The information below is about IL_6CZR_155

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5IMR|1|A|G|1057
5IMR|1|A|G|1058
*
5IMR|1|A|U|1199
5IMR|1|A|C|1200
5IMR|1|A|A|1201
5IMR|1|A|G|1202
5IMR|1|A|C|1203

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S3

Chain N

30S ribosomal protein S10

Chain R

30S ribosomal protein S14 type Z